The full-empty ratio in AAV doesn't cut it anymore. Many "full" vectors actually have truncated genomes. This paper dives deeper into this important quality metric. Here, the authors outline a new method of AAV analysis - Charge Detection Mass Spectrometry (CDMS). The method was used to analyze a variety of AAV samples for genome integrity - an absolutely essential quality attribute for an effective therapeutic. What they found was most illuminating. In some cases, the measured MWs were significantly smaller than the sequence masses, which suggests that genome truncation is the only reasonable explanation for the discrepancy. If you aren't considering the "full-partial-empty" ratio in your AAV therapeutic... You should be. Kudos to the authors Lauren F. Barnes, Benjamin Draper, Justin Kurian, Yu-Ting Chen, Tatiana Shapkina, Thomas Powers, and Martin Jarrold - very insightful work! For a curated list of papers linked to viral vector process development, check out #pdjournalclub #biotechnology #research #genetherapy #science #bioprocessing #quality
Thanks for sharing this important paper Benjamin! Let’s face it, these viral carriers are much more complex and heterogeneous than previous generations of pharmaceuticals including formulations. So it needs a broader battery of analytical methods and the ability to look into more detail
Such an interesting publication, Benjamin! 👏 The results emphasize the importance of genome length determination in AAVs. A Swedish virology company, Vironova has developed an excellent method for genome length measurements with cryoEM, check out the webinar about the method on Wednesday (April 19): https://my.demio.com/ref/78C0uQPOdS9ZwNYS
Ah, remember the joys of dealing with those ITRs. CD-MS is an expensive proposition for that kind of analysis at smaller scale, but it may make sense for batch QC.
Interesting article
This is a technology with real potential to give us so much more insight into the production of these vectors.
Interesting article - thank you for sharing dear Benjamin 🙏
Megane Aebischer have you read this?
Customer focused mass spectrometry service in Europe | Expertise in high mass and native mass spectrometry | Protein characterization enthusiast
1yConfirming the molecular mass is critical for determining the analytes integritý. However, the major limitation I see with CDMS is the fact that a priori it can only measure exactly one ion at a time. Thus reasonable ion statistics requires long measurement time. The goal needs to be to improve techniques to achieve high mass determination and sufficient resolution to allow for charge detection on "conventional" analysers such as TOF or Orbitrap... #nativeMS #massspec #massspectrometry