MP faculty publications: March 2023

1. The capsid lattice engages a bipartite NUP153 motif to mediate nuclear entry of HIV-1 cores

   Shen Q, Kumari S, Xu C, Jang S, Shi J, Burdick RC, Levintov L, Xiong Q, Wu C, Devarkar SC, Tian T, Tripler TN, Hu Y, Yuan S, Temple J, Feng Q, Lusk CP, Aiken C, Engelman AN, Perilla JR, Pathak VK, Lin C, Xiong Y.
   Proc Natl Acad Sci U S A. 2023 Mar 28;120(13):e2202815120.

2. T cell dynamism and immune-related adverse events

   Johnson DB, Balko JM.
   Cancer Cell. 2023 Feb 17:S1535-6108(23)00034-X.

3. Peripheral T-cell receptor repertoire dynamics in small cell lung cancer

   Balbach ML, Axelrod ML, Balko JM, Bankhead A, Shaffer T, Lim L, Guo J, Hernandez J, Li M, Iams WT.
   Transl Lung Cancer Res. 2023 Feb 28;12(2):257-265.

4. Rare immune-related adverse events in patients with melanoma: incidence, spectrum, and clinical presentations

   Park BC, Narayanan S, Gavraldis A, Ye F, Fan R, Sullivan RJ, Boland G, Reynolds KL, Balko JM, Carlino MS, Long GV, Zubiri L, Menzies AM, Johnson DB.
   Oncoimmunology. 2023 Mar 8;12(1):2188719.

5. Pretreatment with a Novel Toll-like Receptor 4 Agonist Phosphorylated Hexaacyl Disaccharide Attenuates Renal Ischemia-Reperfusion Injury

   Hernandez A, Patil NK, Brewer M, Delgado R, Himmel L, Lopez LN, Bohannon JK, Owen AM, Sherwood ER, de Caestecker MP.
   Am J Physiol Renal Physiol. 2023 Mar 30.

6. Exploiting embryonic niche conditions to grow Wilms tumor blastema in culture

   Wojcik HM, Lovvorn HN 3rd, Hollingshead M, Pierce J, Stotler H, Murphy AJ, Borgel S, Phelps HM, Correa H, Perantoni AO.
   Front Oncol. 2023 Mar 16;13:1091274.

7. Slow-Growing Pediatric Neck Mass

   Schauwecker N, Correa H, Belcher R
   JAMA Otolaryngol Head Neck Surg. 2023 Mar 9.

8. Identification of an Essential LolD-Like Protein in Helicobacter pylori

   McClain MS, Bryant KN, McDonald WH, Algood HMS, Cover TL
   J Bacteriol. 2023 Mar 27:e0005223.

9. Reply to 'Imbalance of threat and soothing systems in fibromyalgia: rephrasing an established mechanistic model?'

   Pinto AM, Geenen R, Wager TD, Lumley MA, Häuser W, Kosek E, Ablin JN, Amris K, Branco J, Buskila D, Castelhano J, Castelo-Branco M, Crofford LJ, Fitzcharles MA, López-Solà M, Luís M, Marques TR, Mease PJ, Palavra F, Rhudy JL, Uddin LQ, Castilho P, Jacobs JWG, da Silva JAP.
   Nat Rev Rheumatol. 2023 Mar 23.

10. Reply to: Hypothetical model ignores many important pathophysiologic mechanisms in fibromyalgia

    Pinto AM, Geenen R, Wager TD, Häuser W, Kosek E, Ablin JN, Amris K, Branco J, Buskila D, Castelhano J, Castelo-Branco M, Crofford LJ, Fitzcharles MA, López-Solà M, Luís M, Marques TR, Mease PJ, Palavra F, Rhudy JL, Uddin LQ, Castilho P, Jacobs JWG, da Silva JAP
    Nat Rev Rheumatol. 2023 Mar 24.

11. Potently neutralizing human monoclonal antibodies against the zoonotic pararubulavirus Sosuga virus

    Parrington HM, Kose N, Armstrong E, Handal LS, Diaz S, Reidy J, Dong J, Stewart-Jones GB, Shrivastava-Ranjan P, Jain S, Albariño CG, Carnahan RH, Crowe JE
    CI Insight. 2023 Feb 28:e166811.

12. Structural constraints link differences in neutralization potency of human anti-Eastern equine encephalitis virus monoclonal antibodies

    Williamson LE, Bandyopadhyay A, Bailey K, Sirohi D, Klose T, Julander JG, Kuhn RJ, Crowe JE Jr.
    Proc Natl Acad Sci U S A. 2023 Mar 28;120(13):e2213690120.

13. Antigenic mapping and functional characterization of human new world hantavirus neutralizing antibodies

    Engdahl TB, Binshtein E, Brocato RL, Kuzmina NA, Principe LM, Kwilas SA, Kim RK, Chapman NS, Porter MS, Guardado-Calvo P, Rey FA, Handal LS, Diaz SM, Zagol-Ikapitte IA, Tran MH, McDonald WH, Meiler J, Reidy JX, Trivette A, Bukreyev A, Hooper JW, Crowe JE
    Elife. 2023 Mar 27;12:e81743.

14. A site on factor XII required for productive interactions with polyphosphate

    Shamanaev A, Litvak M, Cheng Q, Ponczek M, Dickeson SK, Smith SA, Morrissey JH, Gailani D.
    J Thromb Haemost. 2023 Mar 1:S1538-7836(23)00162-9.

15. Epithelial talin-1 protects mice from citrobacter rodentium-induced colitis by restricting bacterial crypt intrusion and enhancing t cell immunity

    Latour YL, Allaman MM, Barry DP, Smith TM, Williams KJ, McNamara KM, Jacobse J, Goettel JA, Delgado AG, Piazuelo MB, Zhao S, Gobert AP, Wilson KT.
    Gut Microbes. 2023 Jan-Dec;15(1):2192623.

16. Nanoparticle STING Agonist Reprograms the Bone Marrow to an Antitumor Phenotype and Protects Against Bone Destruction

    Florian DC, Bennett NE, Odziomek M, Baljon JJ, Wehbe M, Merkel AR, Fischer MA, Savona MR, Rhoades JA, Guelcher SA, Wilson JT.
    Cancer Res Commun. 2023 Feb 8;3(2):223-234.

17. Defining the Infant Male Urobiome and Moving Towards Mechanisms in Urobiome Research

    Hadjifrangiskou M, Reasoner S, Flores V, Horn GV, Morales G, Peard L, Abelson B, Manuel C, Lee J, Baker B, Williams T, Schmitz J, Clayton D.
    Res Sq [Preprint]. 2023 Mar 7:rs.3.rs-2618137.

18. Re-emergence of Parechovirus: 2017-2022 National Trends of Detection in Cerebrospinal Fluid

    Tao L, Humphries RM, Banerjee R, Gaston DC.
    Open Forum Infect Dis. 2023 Mar 1;10(3):ofad112.

19. Contemporary Considerations for Establishing Reference Methods for Antibacterial Susceptibility Testing

    Humphries RM, Miller L, Zimmer B, Matuschek E, Hindler JA.
    J Clin Microbiol. 2023 Mar 27:e0188622.

20. Low Gut Microbial Diversity Augments Estrogen-Driven Pulmonary Fibrosis in Female-Predominant Interstitial Lung Disease.

    Chioma OS, Mallott E, Shah-Gandhi B, Wiggins Z, Langford M, Lancaster AW, Gelbard A, Wu H, Johnson JE, Lancaster L, Wilfong EM, Crofford LJ, Montgomery CG, Van Kaer L, Bordenstein S, Newcomb DC, Drake WP.
    Cells. 2023 Feb 28;12(5):766. doi: 10.3390/cells12050766.

21. The ion channel CALHM6 controls bacterial infection-induced cellular cross-talk at the immunological synapse

    Danielli S, Ma Z, Pantazi E, Kumar A, Demarco B, Fischer FA, Paudel U, Weissenrieder J, Lee RJ, Joyce S, Foskett JK, Bezbradica JS.
    EMBO J. 2023 Mar 2:e111450.

22. CD4+ T cells expressing CX3CR1, GPR56, with variable CD57 are associated with cardiometabolic diseases in persons with HIV

    Wanjalla CN, Gabriel CL, Fuseini H, Bailin SS, Mashayekhi M, Simmons J, Warren CM, Glass DR, Oakes J, Gangula R, Wilfong E, Priest S, Temu T, Newell EW, Pakala S, Kalams SA, Gianella S, Smith D, Harrison DG, Mallal SA, Koethe JR.
    Front Immunol. 2023 Feb 14;14:1099356.

23. The cellular and KSHV A-to-I RNA editome in primary effusion lymphoma and its role in the viral lifecycle.

    Rajendren S, Ye X, Dunker W, Richardson A, Karijolich J.
    Nat Commun. 2023 Mar 13;14(1):1367.

24. Cecum axis (CecAx) preservation reveals physiological and pathological gradients in mouse gastrointestinal epithelium

    Lunnemann HM, Shealy NG, Reyzer ML, Shupe JA, Green EH, Siddiqi U, Lacy DB, Byndloss MX, Markham NO
    Gut Microbes. 2023 Jan-Dec;15(1):2185029.

25. Direct visualization of transcription-replication conflicts reveals post-replicative DNA:RNA hybrids

    Stoy H, Zwicky K, Kuster D, Lang KS, Krietsch J, Crossley MP, Schmid JA, Cimprich KA, Merrikh H, Lopes M.
    Nat Struct Mol Biol. 2023 Mar;30(3):348-359.

26. The in vivo measurement of replication fork velocity and pausing by lag-time analysis

    Huang D, Johnson AE, Sim BS, Lo TW, Merrikh H, Wiggins PA.
    Nat Commun. 2023 Mar 30;14(1):1762.

27. Ebola virus disease: In vivo protection provided by the PAMP restricted TLR3 agonist rintatolimod and its mechanism of action

    Corona A, Strayer D, Distinto S, Daino GL, Paulis A, Tramontano E, Mitchell WM.
    Antiviral Res. 2023 Feb 16;212:105554.

28. Abatacept for Delay of Type 1 Diabetes Progression in Stage 1 Relatives at Risk: A Randomized, Double-Masked, Controlled Trial

    Russell WE, Bundy BN, Anderson MS, Cooney LA, Gitelman SE, Goland RS, Gottlieb PA, Greenbaum CJ, Haller MJ, Krischer JP, Libman IM, Linsley PS, Long SA, Lord SM, Moore DJ, Moore WV, Moran AM, Muir AB, Raskin P, Skyler JS, Wentworth JM, Wherrett DK, Wilson DM, Ziegler AG, Herold KC; Type 1 Diabetes TrialNet Study Group.
    Diabetes Care. 2023 Mar 15:dc222200.

29. Longitudinal MRI Shows Progressive Decline in Pancreas Size and Altered Pancreas Shape in Type 1 Diabetes

    Wright JJ, Dulaney A, Williams JM, Hilmes MA, Du L, Kang H, Powers AC, Moore DJ, Virostko J.
    J Clin Endocrinol Metab. 2023 Mar 20:dgad150.

30. Cystic Fibrosis Reprograms Airway Epithelial IL-33 Release and Licenses IL-33 Dependent Inflammation

    Cook DP, Thomas CM, Wu AY, Rusznak M, Zhang J, Zhou W, Cephus JY, Gibson-Corley KN, Polosukhin VV, Norlander AE, Newcomb DC, Stoltz DA, Peebles RS Jr.
    Am J Respir Crit Care Med. 2023 Mar 23.

31. Mammalian orthoreoviruses exhibit rare genotype variability in genome constellations

    Diller JR, Thoner TW Jr, Ogden KM.
    Infect Genet Evol. 2023 Mar 5;110:105421.

32. Intravesical Oncolytic Virotherapy and Immunotherapy for Non-Muscle Invasive Bladder Cancer Mouse Model

    Smelser WW, Wang J, Ogden KM, Chang SS, Kirschner AN.
    BJU Int. 2023 Mar 24.

33. A Paternal Fish Oil Diet Preconception Reduces Lung Inflammation in a Toxicant-Driven Murine Model of New Bronchopulmonary Dysplasia

    Rumph JT, Stephens VR, Ameli S, Brown LK, Rayford KJ, Nde PN, Osteen KG, Bruner-Tran KL.
    Mar Drugs. 2023 Feb 27;21(3):161.

34. A Case Study of Dysfunctional Nicotinamide Metabolism in a 20-Year-Old Male

    DeBalsi KL, Newman JH, Sommerville LJ, Phillips JA 3rd, Hamid R, Cogan J, Fessel JP, Evans AM, Undiagnosed Diseases Network; Undiagnosed Diseases Network; Kennedy AD.
    Metabolites. 2023 Mar 8;13(3):399.

35. The histone chaperone NASP maintains H3-H4 reservoirs in the early Drosophila embryo

    Tirgar R, Davies JP, Plate L, Nordman JT.
    PLoS Genet. 2023 Mar 17;19(3):e1010682.

36. Immunometabolism at the crossroads of obesity and cancer-a Keystone Symposia report

    Cable J, Rathmell JC, Pearce EL, Ho PC, Haigis MC, Mamedov MR, Wu MJ, Kaech SM, Lynch L, Febbraio MA, Bapat SP, Hong HS, Zou W, Belkaid Y, Sullivan ZA, Keller A, Wculek SK, Green DR, Postic C, Amit I, Benitah SA, Jones RG, Reina-Campos M, Torres SV, Beyaz S, Brennan D, O'Neill LAJ, Perry RJ, Brenner D.
    Ann N Y Acad Sci. 2023 Mar 24.

37. WPOI-5: Accurately Identified at Intraoperative Consultation and Predictive of Occult Cervical Metastases

    Beute JE, Greenberg LA, Wein LE, Kapustin DA, Fan J, Dowling EM, Samankan S, Matloob A, Xing M, Modica I, Chung D, Carroll W, Rosenthal EL, Khan MN, Chai RL, Brandwein-Weber MS, Urken ML.
    Head Neck Pathol. 2023 Feb 28.

38. Risk Factors for Carbapenem-resistant Pseudomonas aeruginosa Infection in Children: Correspondence

    Chan A, Rebeiro PF, Schmitz J.
    Pediatr Infect Dis J. 2023 Feb 22:e003886

39. Measures of Admission Immunocoagulopathy as an Indicator for In-Hospital Mortality in Patients with Necrotizing Fasciitis: A Retrospective Study

    Johnson SR, Benvenuti T, Nian H, Thomson IP, Baldwin K, Obremskey WT, Schoenecker JG, Moore-Lotridge SN.
    JB JS Open Access. 2023 Feb 28;8(1):e22.00106.

40. Hyperglycemia Increases Severity of Staphylococcus aureus Osteomyelitis and Influences Bacterial Genes Required for Survival in Bone

    Butrico CE, Klopfenstein N, Green ER, Johnson JR, Peck SH, Ibberson CB, Serezani CH, Cassat JE.
    Infect Immun. 2023 Mar 6:e0052922.

41. TP53 mutations are associated with increased infections and reduced hematopoietic cell transplantation rates in myelodysplastic syndrome and acute myeloid leukemia

    Marvin-Peek J, Mason EF, Kishtagari A, Jayani RV, Dholaria B, Kim TK, Engelhardt BG, Chen H, Strickland S, Savani B, Ferrell B, Kassim A, Savona M, Mohan S, Byrne M.
    Transplant Cell Ther. 2023 Mar 9:S2666-6367(23)01166-1.

42. Current landscape of translational and clinical research in myelodysplastic syndromes/neoplasms (MDS): Proceedings from the 1st International Workshop on MDS (iwMDS) Of the International Consortium for MDS (icMDS)

    Bewersdorf JP, Xie Z, Bejar R, Borate U, Boultwood J, Brunner AM, Buckstein R, Carraway HE, Churpek JE, Daver NG, Porta MGD, DeZern AE, Fenaux P, Figueroa ME, Gore SD, Griffiths EA, Halene S, Hasserjian RP, Hourigan CS, Kim TK, Komrokji R, Kuchroo VK, List AF, Loghavi S, Majeti R, Odenike O, Patnaik MM, Platzbecker U, Roboz GJ, Sallman DA, Santini V, Sanz G, Sekeres MA, Stahl M, Starczynowski DT, Steensma DP, Taylor J, Abdel-Wahab O, Xu ML, Savona MR, Wei AH, Zeidan AM.
    Blood Rev. 2023 Mar 11:101072.

43. The effect of developmental pleiotropy on the evolution of insect immune genes

    Williams AM, Ngo TM, Figueroa VE, Tate AT.
    Genome Biol Evol. 2023 Mar 13:evad044.

44. Improving ARDS Diagnosis: Is Lung Ultrasound the Answer?

    Ware LB
    Am J Respir Crit Care Med. 2023 Mar 21.

45. Shotgun Metagenomics of Gastric Biopsies Reveals Compositional and Functional Microbiome Shifts in High- and Low-Gastric-Cancer-Risk Populations from Colombia, South America

    Mannion A, Sheh A, Shen Z, Dzink-Fox J, Piazuelo MB, Wilson KT, Peek R, Fox JG.
    Gut Microbes. 2023 Jan-Dec;15(1):2186677.