September 2020

Featured News

Takeda Pharmaceutical Company joins CBM

We are pleased to announce the addition of Takeda Pharmaceutical Company, Ltd., as the newest member of the Center for Bioanalytic Metrology. Takeda produces lifesaving products to treat oncology, inflammation, neurology, gastroenterology as well as metabolic disorder diseases. Now one of the top 10 pharmaceutical companies in the world since merging with Shire, Takeda has a longstanding commitment to excellence in scientific measurement science research.
“We were really impressed by the mission of this consortium from the beginning and are excited to be part of it now,” commented Muthu Meiyappan, Head of Advanced Analytical Technologies at Takeda. Mark T. Zell, Head, ADSM-US Structure Characterization Group, added, “I personally can’t wait to begin working with all of the center’s researchers. There is so much great science happening, and I am thrilled we are involved.”
"All of us at CBM warmly welcome our newest member and look forward to collaborating on many exciting projects in the future," said CBM director Paul Bohn.

COVID-19 Impacts on CBM Research Projects

Laboratory shutdowns resulting from the COVID-19 pandemic have slowed but not stopped progress on CBM collaborative projects with industry members. While all projects have experienced some delays owing to lab closures and work from home regulations, two CBM projects were actually able to apply for and win NSF RAPID funding for emergency response to the pandemic. Professors Merlin Bruening (Notre Dame) and Jacqueline Linnes (Purdue) were able to build upon their existing project for creating a point-of-care diagnostic for measuring patient levels of therapeutic antibodies to add a program that seeks to develop rapid point-of-care assays for antibodies indicative of infection by SARS-CoV-2, the causative agent of COVID-19. Professors Martin Jarrold and David Clemmer at Indiana University were able to expand their CBM project investigating the use of Charge Detection Mass Spectrometry (CD-MS) for the analysis of Megadalton proteins (molecules with a molecular weight greater than one million) of interest to CBM members to encompass analysis of the SARS-CoV-2 spike protein and the antibody response to COVID-19. Students working on the NSF RAPID projects were granted essential personnel status, allowing them to remain in the laboratory throughout the pandemic, albeit with intense use of personal protective equipment and social distancing. “Our students are very proud and motivated to be helping out on the front lines of our fight against this terrible disease,” commended David Clemmer, a sentiment echoed across all of our CBM-RAPID project leaders.
Work is progressing apace on all CBM projects, with Zoom meetings becoming the norm for project coordination and research planning. Facility shutdowns during March, April, and May slowed the pace of sample and equipment transfers between sites, but these issues are now largely resolved. For example, a library of 30,000 different compounds arrayed in 384 well microplates was recently transferred from Eli Lilly to the laboratory of Professor Graham Cooks of Purdue, where they are being analyzed by high throughput mass spectrometry to aid with machine learning studies that are being carried out in conjunction with Professor Gaurav Chopra. “There were certainly COVID-caused delays,” commented Cooks, “but we are now moving ahead well with industrial member-supplied samples. It is really refreshing to work with industrial colleagues.”

Agilent places new LC-MS instrument into the Chopra Lab at Purdue

As part of their commitment to CBM, Agilent has placed a top of the line LC/MS 6495C Triple Quadrupole system in the lab of Professor Gaurav Chopra at Purdue, where it will be used for the CBM project on Machine Learning for Multiple Reaction Monitoring Mass Spectrometry that is being carried out in conjunction with the Cooks Lab, as well as other CBM projects. “The new instrument is a godsend to our laboratory,” commented Chopra, whose students are now receiving training and will soon be sharing results with the Agilent team and other CBM industry members.

 Grad Student Spotlights

Shannon A. Raab                                             
Department of Chemistry, Indiana University

Hometown: Indianapolis, IN
Ph.D. Advisor: David E. Clemmer
Undergraduate degree: Purdue University
I'm drawn to my current research because: Ion mobility spectrometry is an invaluable tool to study protein structure. While the analysis of protein structure has a deep and rich biochemical history, there is still little known about protein folding and how misfolding occurs to cause neurodegenerative diseases. My research focuses on using variable temperature electrospray ionization to unfold proteins in solution followed by ion mobility analysis to discern the structures. I believe the research being conducted in the Clemmer lab will help pave the way for new mass spectrometry methodologies for protein structural analysis.
Current career goals: I am interested in a research position in an industry laboratory. I would love the opportunity to bring my knowledge of ion mobility spectrometry to a research team interested in integrating structural analysis into their workflows.
The thing I like most about working on a CBM project is: The project I'm currently working on involves the characterization of the spike protein associated with the coronavirus SARS-COV-2. I really enjoy working on this project because it is very collaborative – I work closely with students from the Jarrold group, and we present our results at monthly CBM meetings where industry representatives provide input to help guide our experiments.
What I like most about interacting with the industry representatives: As a senior graduate student interested in an industry position post-graduation, the interactions I have with the industry representatives are vital for my growth as a scientist. These interactions provide me with experience in effective communication with other scientists, as well as exposure to the types of research that interests the partnering companies.
To blow off steam, I like to: I enjoy spending time outdoors, baking, playing videogames, and listening to podcasts.

Joshua Berwanger
Department of Chemistry and Biochemistry, University of Notre Dame

Hometown: Crown Point, IN
Ph.D. Advisor: Merlin Bruening
Undergraduate degree: Grand Valley State University
I'm drawn to my current research because:  I enjoy developing methods that can be used in future devices that will help to make medicine more personalized and effective.
Current career goals: My career goals are to work at a Fortune 500 pharmaceutical company where I can utilize my experience in method development as well as my leadership skills.
The thing I like most about working on a CBM project is: I have many things that I really enjoy about working on a CBM project. The first being that I really enjoy collaborating with researchers from other universities in order to accomplish goals that can have an impact outside of the realm of academia. This gives me a true feeling of fulfillment from my work. I also really enjoy the opportunity to present at every meeting. The meetings help to improve my public speaking skills and help me get more comfortable with communicating my results to researchers outside of my field of study.
What I like most about interacting with the industry representatives: I like that they have a real-world frame of mind when thinking about the project. This helps to lead the project toward solving a real problem opposed to just doing research for the sake of science. This is a useful mindset to get exposed to going forward both in my current research and in my future career.
To blow off steam, I like to: Disc golf and wake surfing.

Tyrel Wagner
Department of Chemistry, Purdue University

Hometown: Riverside, California
Ph.D. Advisor: Mary J. Wirth
Undergraduate degree: Grand Valley State University
I'm drawn to my current research because:  My research mixes my experience building and repairing things with the advanced surface chemistry of chromatography I've learned in the Wirth group.
Current career goals: To work in industry helping to streamline and research therapeutic antibodies.
The CBM project I am currently working on: The part I enjoy most about working with CBM is the industry representatives.
What I like most about interacting with the industry representatives: Academia is not always on the same wavelength as industry and is often not focusing on what industry wants. Working directly with industry representatives I get to see what matters in industry and it gives me a leg up in a future in industry.
To blow off steam, I like to: Walk down to the Wabash River and sit and watch it.

Center UpDates

Fall 2021 IAB Meeting: Thank you to the IAB members who responded to the recent survey. A large majority indicated that their organizations will not allow them to travel to Indiana for an in-person meeting, so we are planning for a Zoom meeting in early December. We will miss interacting personally, but are exploring how we can expand the online experience to include virtual poster sessions with students, presentations of new proposals from this summer's RFP process, and reports from currently funded projects. A save-the-date notice is coming soon.
2021 Proposals: We received proposals from researchers on all three campuses in response the the request we issued this summer. Almost every problem presented by the IAB received at least one response. We are collating the responses and will make them available to the IAB later this month for review and comment, and so the board can select those they wish to see highlighted and considered for funding at the Fall IAB meeting.
2021 IAB Membership Renewals: Later this month IAB representatives will receive a notice that we are ready to submit an invoice to your organization for membership dues for the coming year. That notice will include the contact(s) and/or payment system we have on file for your organization. If there are changes from last year, please let us know.
New NSF Assessment Coordinator: We welcome Dr. Lindsey McGowen, a research scientist in the Department of Psychology at North Carolina State University, as our new NSF-assigned assessment coordinator. Dr. McGowen's research focuses on program evaluation for cooperative science and technology programs, particularly the outcomes and implications of cooperative research centers. We look forward to working with her on future meetings and projects.
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