MP faculty publications: July 2020

1. Temporal Control of the Helicobacter pylori Cag Type IV Secretion System in a Mongolian Gerbil Model of Gastric Carcinogenesis.

   Lin AS, McClain MS, Beckett AC, Caston RR, Harvey ML, Dixon BREA, Campbell AM, Shuman JHB, Sawhney N, Delgado AG, Loh JT, Piazuelo MB, Algood HMS, Cover TL
   mBio. 2020 Jun 30;11(3):

2. DECONSTRUCTING EXTRAPLACENTAL MEMBRANES TO UNDERSTAND BACTERIAL CHORIOAMNIONITIS.

   Aronoff DM
   Trans Am Clin Climatol Assoc. 2020;131:72-79

3. Immunoprecipitation of DNA:RNA Hybrids Using the S9.6 Antibody.

   Gibbons HR, Aune TM
   Methods Mol Biol. 2020;2161:195-207

4. MEK activation drives glycolysis and supports suppressive myeloid cells in TNBC.

   Franklin DA, Sharick JT, Gonzalez-Ericsson PI, Sanchez V, Dean P, Opalenik SR, Cairo S, Judde JG, Lewis MT, Chang JC, Sanders ME, Cook RS, Skala MC, Bordeaux J, Bender JO, Vaupel CA, Geiss G, Hinerfeld D, Balko JM
   JCI Insight. 2020 Jul 07;:

5. Highly Reactive Isolevuglandins Promote Atrial Fibrillation Caused by Hypertension.

   Prinsen JK, Kannankeril PJ, Sidorova TN, Yermalitskaya LV, Boutaud O, Zagol-Ikapitte I, Barnett JV, Murphy MB, Subati T, Stark JM, Christopher IL, Jafarian-Kerman SR, Saleh MA, Norlander AE, Loperena R, Atkinson JB, Fogo AB, Luther JM, Amarnath V, Davies SS, Kirabo A, Madhur MS, Harrison DG, Murray KT
   JACC Basic Transl Sci. 2020 Jun;5(6):602-615

6. Early Changes over Time in the Radiographic Assessment of Lung Edema (RALE) Score are Associated with Survival in Acute Respiratory Distress Syndrome.

   Jabaudon M, Audard J, Pereira B, Jaber S, Lefrant JY, Blondonnet R, Godet T, Futier E, Lambert C, Bazin JE, Bastarache JA, Constantin JM, Ware LB, LIVE study group and the AZUREA network
   Chest. 2020 Jul 10;:

7. High-Fat Diet and Antibiotics Cooperatively Impair Mitochondrial Bioenergetics to Trigger Dysbiosis that Exacerbates Pre-inflammatory Bowel Disease.

   Lee JY, Cevallos SA, Byndloss MX, Tiffany CR, Olsan EE, Butler BP, Young BM, Rogers AWL, Nguyen H, Kim K, Choi SW, Bae E, Lee JH, Min UG, Lee DC, Bäumler AJ
   Cell Host Microbe. 2020 Jul 09;:

8. Microbial management.

   Byndloss MX
   Science. 2020 Jul 10;369(6500):153

9. Factors Associated With Adequate Lamina Propria Sampling and Presence of Lamina Propria Fibrosis in Children with Eosinophilic Esophagitis.

   Hiremath G, Choksi YA, Acra S, Correa H, Dellon ES
   Clin Gastroenterol Hepatol. 2020 Jul 21;:

10. Computationally Designed Cyclic Peptides Derived from an Antibody Loop Increase Breadth of Binding for Influenza Variants.

    Sevy AM, Gilchuk IM, Brown BP, Bozhanova NG, Nargi R, Jensen M, Meiler J, Crowe JE
    Structure. 2020 May 11;:

11. Diverse patterns of antibody variable gene repertoire disruption in patients with amyloid light chain (AL) amyloidosis.

    Chen EC, Rubinstein S, Soto C, Bombardi RG, Day SB, Myers L, Zaytsev A, Majedi M, Cornell RF, Crowe JE
    PLoS One. 2020;15(7):e0235713

12. High Frequency of Shared Clonotypes in Human T Cell Receptor Repertoires.

    Soto C, Bombardi RG, Kozhevnikov M, Sinkovits RS, Chen EC, Branchizio A, Kose N, Day SB, Pilkinton M, Gujral M, Mallal S, Crowe JE
    Cell Rep. 2020 Jul 14;32(2):107882

13. Human antibodies neutralize enterovirus D68 and protect against infection and paralytic disease.

    Vogt MR, Fu J, Kose N, Williamson LE, Bombardi R, Setliff I, Georgiev IS, Klose T, Rossmann MG, Bochkov YA, Gern JE, Kuhn RJ, Crowe JE
    Sci Immunol. 2020 Jul 03;5(49):

14. Humoral Immunity to Hantavirus Infection.

    Engdahl TB, Crowe JE
    mSphere. 2020 Jul 15;5(4):

15. Intramuscular Delivery of Replicon RNA Encoding ZIKV-117 Human Monoclonal Antibody Protects against Zika Virus Infection.

    Erasmus JH, Archer J, Fuerte-Stone J, Khandhar AP, Voigt E, Granger B, Bombardi RG, Govero J, Tan Q, Durnell LA, Coler RN, Diamond MS, Crowe JE, Reed SG, Thackray LB, Carnahan RH, Van Hoeven N
    Mol Ther Methods Clin Dev. 2020 Sep 11;18:402-414

16. Potently neutralizing and protective human antibodies against SARS-CoV-2.

    Zost SJ, Gilchuk P, Case JB, Binshtein E, Chen RE, Nkolola JP, Schäfer A, Reidy JX, Trivette A, Nargi RS, Sutton RE, Suryadevara N, Martinez DR, Williamson LE, Chen EC, Jones T, Day S, Myers L, Hassan AO, Kafai NM, Winkler ES, Fox JM, Shrihari S, Mueller BK, Meiler J, Chandrashekar A, Mercado NB, Steinhardt JJ, Ren K, Loo YM, Kallewaard NL, McCune BT, Keeler SP, Holtzman MJ, Barouch DH, Gralinski LE, Baric RS, Thackray LB, Diamond MS, Carnahan RH, Crowe JE
    Nature. 2020 Jul 15;:

17. PyIR: a scalable wrapper for processing billions of immunoglobulin and T cell receptor sequences using IgBLAST.

    Soto C, Finn JA, Willis JR, Day SB, Sinkovits RS, Jones T, Schmitz S, Meiler J, Branchizio A, Crowe JE
    BMC Bioinformatics. 2020 Jul 16;21(1):314

18. Rapid isolation and profiling of a diverse panel of human monoclonal antibodies targeting the SARS-CoV-2 spike protein.

    Zost SJ, Gilchuk P, Chen RE, Case JB, Reidy JX, Trivette A, Nargi RS, Sutton RE, Suryadevara N, Chen EC, Binshtein E, Shrihari S, Ostrowski M, Chu HY, Didier JE, MacRenaris KW, Jones T, Day S, Myers L, Eun-Hyung Lee F, Nguyen DC, Sanz I, Martinez DR, Rothlauf PW, Bloyet LM, Whelan SPJ, Baric RS, Thackray LB, Diamond MS, Carnahan RH, Crowe JE
    Nat Med. 2020 Jul 10;:

19. An mRNA Vaccine against SARS-CoV-2 - Preliminary Report.

    Jackson LA, Anderson EJ, Rouphael NG, Roberts PC, Makhene M, Coler RN, McCullough MP, Chappell JD, Denison MR, Stevens LJ, Pruijssers AJ, McDermott A, Flach B, Doria-Rose NA, Corbett KS, Morabito KM, O'Dell S, Schmidt SD, Swanson PA, Padilla M, Mascola JR, Neuzil KM, Bennett H, Sun W, Peters E, Makowski M, Albert J, Cross K, Buchanan W, Pikaart-Tautges R, Ledgerwood JE, Graham BS, Beigel JH, mRNA-1273 Study Group
    N Engl J Med. 2020 Jul 14;:

20. Remdesivir Inhibits SARS-CoV-2 in Human Lung Cells and Chimeric SARS-CoV Expressing the SARS-CoV-2 RNA Polymerase in Mice.

    Pruijssers AJ, George AS, Schäfer A, Leist SR, Gralinksi LE, Dinnon KH, Yount BL, Agostini ML, Stevens LJ, Chappell JD, Lu X, Hughes TM, Gully K, Martinez DR, Brown AJ, Graham RL, Perry JK, Du Pont V, Pitts J, Ma B, Babusis D, Murakami E, Feng JY, Bilello JP, Porter DP, Cihlar T, Baric RS, Denison MR, Sheahan TP
    Cell Rep. 2020 Jul 07;:107940

21. The Proximal Airway Is a Reservoir for Adaptive Immunologic Memory in Idiopathic Subglottic Stenosis.

    Gelbard A, Wanjalla C, Wootten CT, Drake WP, Lowery AS, Wheeler DA, Cardenas MF, Sikora AG, Pathak RR, McDonnell W, Mallal S, Pilkinton M
    Laryngoscope. 2020 Jun 30;:

22. Effects of Pregnancy and Isoniazid Preventive Therapy on M. tuberculosis Interferon Gamma Response Assays in Women with HIV.

    Weinberg A, Aaron L, Montepiedra G, Sterling TR, Browning R, Mmbaga B, Vhembo T, Naik S, Kabugho E, Masheto G, Pahwa S, Mathad JS, LaCourse SM, McCarthy K, Bradford S, Theron G, Costello D, Zimmer B, Pierre MF, Gausi K, Denti P, Haas DW, Gupta A, IMPAACT P1078 study team
    Clin Infect Dis. 2020 Jul 28;:

23. Implications of Efavirenz Pharmacogenetics when Switching from Efavirenz- to Dolutegravir-containing Antiretroviral Regimens.

    Haas DW, Acosta EP
    Clin Infect Dis. 2020 Jul 15;:

24. Erratum: Structures of collagen IV globular domains: insight into associated pathologies, folding and network assembly. Corrigendum.

    Casino P, Gozalbo-Rovira R, Rodríguez-Díaz J, Banerjee S, Boutaud A, Rubio V, Hudson BG, Saus J, Cervera J, Marina A
    IUCrJ. 2020 Jul 01;7(Pt 4):777

25. Nur77 controls tolerance induction, terminal differentiation, and effector functions in semi-invariant natural killer T cells.

    Kumar A, Hill TM, Gordy LE, Suryadevara N, Wu L, Flyak AI, Bezbradica JS, Van Kaer L, Joyce S
    Proc Natl Acad Sci U S A. 2020 Jul 01;:

26. The RNA quality control pathway nonsense-mediated mRNA decay targets cellular and viral RNAs to restrict KSHV.

    Zhao Y, Ye X, Shehata M, Dunker W, Xie Z, Karijolich J
    Nat Commun. 2020 Jul 03;11(1):3345

27. RSK2 Maintains Adult Estrogen Homeostasis by Inhibiting ERK1/2-Mediated Degradation of Estrogen Receptor Alpha.

    Ludwik KA, Sandusky ZM, Stauffer KM, Li Y, Boyd KL, O'Doherty GA, Stricker TP, Lannigan DA
    Cell Rep. 2020 Jul 21;32(3):107931

28. COX Inhibition Increases Alternaria-Induced Pulmonary Group 2 Innate Lymphoid Cell Responses and IL-33 Release in Mice.

    Zhou W, Zhang J, Toki S, Goleniewska K, Norlander AE, Newcomb DC, Wu P, Boyd KL, Kita H, Peebles RS
    J Immunol. 2020 Jul 20;:

29. Estrogen receptor-α signaling increases allergen-induced IL-33 release and airway inflammation.

    Cephus JY, Gandhi VD, Shah R, Brooke Davis J, Fuseini H, Yung JA, Zhang J, Kita H, Polosukhin VV, Zhou W, Newcomb DC
    Allergy. 2020 Jul 10;:

30. Endoscopy for Gastric Cancer Screening is Cost-effective for Asian Americans in the United States.

    Shah SC, Canakis A, Peek RM, Saumoy M
    Clin Gastroenterol Hepatol. 2020 Jul 21;:

31. Missed diagnoses: Clinically relevant lessons learned through medical mysteries solved by the Undiagnosed Diseases Network.

    Cope H, Spillmann R, Rosenfeld JA, Brokamp E, Signer R, Schoch K, Kelley EG, Sullivan JA, Macnamara E, Lincoln S, Golden-Grant K, Orengo JP, Clark G, Burrage LC, Posey JE, Punetha J, Robertson A, Cogan J, Phillips JA, Martinez-Agosto J, Shashi V
    Mol Genet Genomic Med. 2020 Jul 30;:e1397

32. Financial and Clinical Ramifications of Introducing a Novel Pediatric Enhanced Recovery After Surgery Pathway for Pediatric Complex Hip Reconstructive Surgery.

    Franklin AD, Sobey JH, Brenn BR, Johnson SR, Schoenecker JG, Gartley AC, Shotwell MS, Gay JC, Wanderer JP
    Anesth Analg. 2020 Jul 07;:

33. A prospective cohort study that examined acute kidney injury and kidney outcomes, cardiovascular events and death informs on long-term clinical outcomes.

    Ikizler TA, Parikh CR, Himmelfarb J, Chinchilli VM, Liu KD, Coca SG, Garg AX, Hsu CY, Siew ED, Wurfel MM, Ware LB, Faulkner GB, Tan TC, Kaufman JS, Kimmel PL, Go AS, ASSESS-AKI Study Investigators
    Kidney Int. 2020 Jul 21;: