Molecular Connections
Molecular Connections
FALL 2023

Greetings from Genetics and Biochemistry

Lots going on here in Clemson Genetics and Biochemistry, as you’ll see in the stories below! Our faculty are making creative discoveries, receiving major grant awards and publishing wonderful papers. We’ve minted eight new Ph.D.s in the last few months, and we’re studying everything from dogs (see profile of our new faculty member, Kelsey Witt-Dillon) to DNA in the sky (see profile of Kimberly Metris). 

The end of Fall semester brings a bittersweet moment with the retirement of Julia Frugoli, but we’re excited about the promise of at least three new faculty members in the coming year (recruiting underway now).
  
We’re also excited about the impending move of our departmental “home” into new quarters in the Life Sciences Building   any day now. Stay tuned for photos in our Spring edition!

Go Tigers!
David F. Clayton, Ph.D.
Department Chair
Genetics and Biochemistry
Decorative header: Research, with DNA icon at left.

Developing a System to Reveal DNA in the Sky

Lecturer Kimberly Métris '15 took to the sky for her latest research project: sequencing over 50 types of airborne bacteria sampled from the air around a plane she piloted herself. Métris became intrigued by the atmospheric particles of dust and sand. “I pondered what genetic material was there and in the air I fly through every day,” says Métris.
The study, titled "Aircraft surveys for air eDNA: probing biodiversity in the sky," and published in the journal PeerJ Life and Environment, found the widespread, heterogenous presence of prokaryotic and eukaryotic environmental DNA in the atmosphere.
Learn more about Métris' reserach by reading the Clemson World article and the Clemson News article or by listening to the Clemson Earthly Podcast and watching the Clemson News video.
Decorative header: People, with DNA icon at left.

Eight Ph.D.s Awarded Summer and Fall 2023 

With the end of the academic year, we saw eight new Ph.D.s from the department in Summer and Fall. They are listed below with the titles of their dissertations.
Summer 2023
Biochemistry and Molecular Biology
  • Garrett Buzzard, "Biochemical Characterization of SSB1, SSB2, SYCP3, and MEILB2 in Meiotic Recombination"
  • Alexandra Hawks, "Elucidation Mechanisms of RAD51 Regulation During the Replication Stress Response"
Genetics
  • Perry Kezh, "Elucidation Acetate: Identification of Transporters and Enzymes Required for Acetate Utilization in the Fungal Pathogen Cyptococcus Neoformans"
  • Rebecca MacPherson, "A Systems Genetics Approach to Drosophila Melanogaster Models of Rare and Common Neurodevelopmental Disorders"

Fall 2023
Biochemistry and Molecular Biology
  • Jin Cho, "Biochemical and Kinetic Analysis of Phosphofructokinase in the Eukaryotic Human Pathogen Entamoeba Histolytica"
  • Chuan Liang, "Biochemical Analysis of UDGX-A Crosslinking Uracil-DNA Glycosylase"
  • Joshua Saliutama, "Fatty Acids and Parasitism: Towards a Better Understanding of Lipid Metabolism in Trypanosoma Brucei"
  • Kristina Parman, "Characterization of the Effects of the Pyrazolopyrimidine Inhibitor Grassofermata (NAV-2729) in the Eukaryotic Pathogen Trypansoma Brucei"
Decorative header: People, with DNA icon at left.
Y Chromosomes
A team of scientists — including the department's assistant professor Miriam Konkel and post of doctoral fellow Mark Loftus, both located at the Center for Human Genetics — has fully sequenced multiple Y chromosomes from populations around the world. The research provides an important foundation for future studies on how the Y chromosome may contribute to certain disorders and diseases.  
Alex Feltus, professor, and Julia Frugoli, alumni distinguished professor of genetics, have collaborated with a team of Clemson University researchers that conducted National Science Foundation-funded research exploring the expression of genes during the nodulation process in the model plant Medicago truncatula, which is an alfalfa that grows in lawns and fields.

Clemson World ran an article in their fall 2023 issue on Genetics and Biochemistry alumna Brittany Avin McKelvey '15, Ph.D. 

After battling thyroid cancer as a teenager, McKelvey continues to fight the disease today from a scientific standpoint.
As an undergrad double-majoring in genetics and biochemistry, McKelvey studied a life-threatening fungal pathogen for people with compromised immune systems, in the Eukaryotic Pathogens Innovation Center (EPIC) under Cheryl Ingram-Smith and Kerry Smith. She then went to Johns Hopkins University School of Medicine to conduct thyroid cancer research, where she earned her Ph.D. in molecular biology and genetics.
Now, McKelvey is the Director of Regulatory Affairs for Friends of Cancer Research and a member of the National Cancer Institute’s Federal Advisory Committee. 
Decorative header: Research, with DNA icon at left.
Cheryl Ingram-Smith received a new NIH r21 award totalling $224,191 for her grant, "Identification and characterization of early encystation genes in the human parasite Entamoeba histolytica."
Zhana Duren was awarded an MIRA R35 fund from NIGMS/NIH for his grant, "Statistical methods for interpretation of genetic variants by gene regulatory networks," the total amount being $1.78 million. 
Associate professor, Michael Sehorn has been named to the Creative Inquiry Inaugural Class of Faculty Fellows, who will assist the CI office to enhance and grow the program in each of their colleges.
James Morris was co-chair and an invited speaker at the American Society of Tropical Medicine Symposium in Chicago.
Zhana Duren was invited to give two presentations.
Post doctoral fellow Jillian Milanes, along with James Morris, biochemistry alumna Allyson Drawdy and current biochemistry senior Matt Monaghan, published the paper "Glucose metabolism in the pathogenic free-living amoebae: Tempting targets for treatment development."
Zhana Duren was named as a member of the Editorial Board of Genome Biology.
Biochemistry and molecular biology graduate students Xiaotong Chen and Zhaohui Chen were both awarded travel grants to participate in the 2023 Society for In Vitro Biology, and presented oral presentations on their dissertation research, where Chen (left) won the first place for student oral presentation competition. 
Graduate student Sabrina Pizzaro won first place at the IDeA South Eastern Region Conference in Columbia, South Carolina, in the Biochemistry Division for her poster,  “Use of Peroxisomal Targeting Sequences in Drug Delivery."

Junior biochemistry major Thomas Caputo started the Clemson Heart Association earlier this year. The association raises funds alongside of the America Heart Association in support of the fight against heart disease and stroke.

In May 2023, Kendra Gordillo '21 genetics graduate was selected for a highly competitive Fulbright Scholarship to study at Vrije Univeriteit Amsterdam. Gordillo plans to enroll in two master's degree programs: philosophy, bioethics and heath; and research in global health.

Second-year Ph.D. student Sky (Xinya) Lu, published, her first manuscript, Histology of Adventitious Root Formation and Phytohormone Analysis of American Chestnut Cuttings, in Journal of Environmental Horticulture. Lu presented a poster on her research results at the annual In Vitro Biology Meeting in Norfork, Virginia this summer.

Junior biochemistry major Søren Spina recently received Science Student Advisory Board (SciSAB) Grants in Aid of Research funding for his project, "Energy Biosensor Transfection in Cardiomyocytes." The goal of this project is transfecting several biosensors in a cell to monitor alterations in metabolism. 

Genetics alumna Megan Robertson '14 was recently named in the 2024 issue of "Best Lawyers: Ones to Watch" in Health Care Law.

Graduate student Colm Roster had his first publication accepted by the scientific journal Pathogens. The paper titled "Enolase Inhibitors as Early Lead Therapeutics against Trypanosoma brucei'" also included lecuterer Heidi Anderson, post doctoral fellow Emily Knight, graduate student Sabrina Pizzaro and genetics almuna Danielle LaVigne

Our department is growing!

» An interview with our newest assistant professor, Kelsey Witt-Dillion, Ph.D.

What interested you in coming to Clemson University?
I’m really excited about all of the great genetics research coming out of Clemson across the departments, including Genetics and Biochemistry, Biological Sciences and the Center for Human Genetics. I’m happy to be joining a department with lots of new faculty doing some really exciting work. I’ve also heard great things about Clemson undergraduates, and I’m looking forward to start working with them.


How did you get interested in your (degree, career, research)?
I was interested in genetics even in high school, so I pursued it as my undergraduate degree. During my undergrad Population Genetics course, I learned about the “Mitochondrial Eve” and was fascinated by the idea that we could use genomics to learn more about the history of populations. That led me to an ancient DNA laboratory for graduate school. I started working on ancient dogs by chance, but really enjoyed studying domestication and the history of domesticated populations. From there my work expanded into humans and their history, especially our past interactions with archaic humans like Neanderthals.

What’s a short overview of what you do and hope to accomplish?
I use computational methods and population genetics to study the genomes of ancient and modern humans and domesticated animals and learn more about their history of migration, admixture and selection. I have two primary goals. My first goal is to learn more about the history of domesticated animal populations and the humans that traveled with them. My second goal is to compare genomes of archaic humans (like Neanderthals and Denisovans) to modern humans to learn more about their history of interactions and also understand the impact of archaic variation on modern human health.

What have you discovered in your research?
A lot of my domestication work has been in dogs, and I’ve demonstrated that dogs migrated with humans to the Americas over 15,000 years ago, but nearly all of the genetic diversity from these ancient dogs was lost due to European colonization. I’ve also been able to show parallels in demographic history between ancient human and dog populations in the Americas. My work in archaic introgression has focused on how archaic variants are distributed across global populations, and I’ve been able to demonstrate that the pattern of archaic variation we see in modern humans is likely due to multiple encounters between archaic and modern humans through time. I’ve also looked at some functional genes, such as pharmacogenes (which code for enzymes that metabolize all sorts of compounds) and, we see evidence that some of these variants may have been inherited from archaic humans. 

What do you hope to teach our students?
Beyond teaching concepts in genetics, I hope to instill scientific literacy in students. So many scientific concepts show up in daily life and in news reports, and I want to teach students to be able to interpret the data they see and evaluate it with a critical eye. I hope to do this by teaching students to read scientific papers and understand figures and also by connecting course content to relevant real-world examples so that students can understand how the concepts they learn in our courses are useful in their next steps.
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