Our Publications - May

• 1. MAGI-2 in prostate cancer: an immunohistochemical study. Goldstein J, Borowsky AD, Goyal R, Roland JT, Arnold SA, Gellert LL, Clark PE, Hameed O, Giannico GA.
  Hum Pathol. 2016 Jun;52:83-91. doi: 10.1016/j.humpath.2016.01.003

• 2. Comparative Genomics of Two Closely Related Wolbachia with Different Reproductive Effects on Hosts. Newton IL, Clark ME, Kent BN, Bordenstein SR, Qu J, Richards S, Kelkar YD, Werren JH.
  Genome Biol Evol. 2016 Jun 3;8(5):1526-1542.

• 3. Respiratory syncytial virus infection activates IL-13-producing group 2 innate lymphoid cells through thymic stromal lymphopoietin. Stier MT, Bloodworth MH, Toki S, Newcomb DC,Goleniewska K, Boyd KL, Quitalig M, Hotard AL, Moore ML, Hartert TV, Zhou B, McKenzie AN, Peebles RS Jr. J Allergy Clin Immunol. 2016 Apr 9. pii: S0091-6749(16)30080-X. doi: 10.1016/j.jaci.2016.01.050. [Epub ahead of print]

• 4. Multiple Inhibitory Pathways Contribute to Lung CD8+ T Cell Impairment and Protect against Immunopathology during Acute Viral Respiratory Infection. Erickson JJ, Rogers MC, Tollefson SJ, Boyd KL, Williams JV.
  J Immunol. 2016 Jun 3. pii: 1502115. [Epub ahead of print]

• 5. Pathogenic Helicobacter pylori strains translocate DNA and activate TLR9 via the cancer-associated cag type IV secretion system. Varga MG, Shaffer CL, Sierra JC, Suarez G, Piazuelo MB, Whitaker ME, Romero-Gallo J, Krishna US, Delgado A, Gomez MA, Good JA, Almqvist F, Skaar EP, Correa P, Wilson KT, Hadjifrangiskou M, Peek RM. Oncogene. 2016 May 9. doi: 10.1038/onc.2016.158. [Epub ahead of print]

• 6.Epigenetic and genetic variation in GATA5 is associated with gastric disease risk. Sobota RS, Kodaman N, Mera R, Piazuelo MB, Bravo LE, Pazos A, Zabaleta J, Delgado AG, El-Rifai W, Morgan DR, Wilson KT, Correa P, Williams SM, Schneider BG.
  Hum Genet. 2016 May 25. [Epub ahead of print]

• 7. Improving Loop Modeling of the Antibody Complementarity-Determining Region 3 Using Knowledge-Based Restraints. Finn JA, Koehler Leman J, Willis JR, Cisneros A 3rd,Crowe JE Jr, Meiler J.
  PLoS One. 2016 May 16;11(5):e0154811. doi: 10.1371/journal.pone.0154811. eCollection 2016.

• 8. A Chimeric Pneumovirus Fusion Protein Carrying Neutralizing Epitopes of Both MPV and RSV. Wen X, Pickens J, Mousa JJ, Leser GP, Lamb RA,Crowe JE Jr,Jardetzky TS.
  PLoS One. 2016 May 25;11(5):e0155917. doi: 10.1371/journal.pone.0155917. eCollection 2016.

• 9.Epithelial-Derived Inflammation Disrupts Elastin Assembly and Alters Saccular Stage Lung Development. Benjamin JT, van der Meer R, Im AM, Plosa EJ, Zaynagetdinov R, Burman A, Havrilla ME, Gleaves LA, Polosukhin VV, Deutsch GH, Yanagisawa H, Davidson JM, Prince LS, Young LR, Blackwell TS.
  Am J Pathol. 2016 May 12. pii: S0002-9440(16)30065-7. doi: 10.1016/j.ajpath.2016.02.016. [Epub ahead of print]

• 10. Mutagenesis of S-adenosyl-L-methionine-binding Residues in Coronavirus nsp14 N7-Methyltransferase Demonstrates Differing Requirements for Genome Translation and Resistance to Innate Immunity. Case JB, Ashbrook AW,Dermody TS, Denison MR.
  J Virol. 2016 Jun 1. pii: JVI.00542-16. [Epub ahead of print]

• 11. Antagonism of the Sodium-Potassium ATPase Impairs Chikungunya Virus Infection. Ashbrook AW, Lentscher AJ, Zamora PF, Silva LA, May NA, Bauer JA, Morrison TE, Dermody TS.
  MBio. 2016 May 24;7(3). pii: e00693-16. doi: 10.1128/mBio.00693-16.

• 12. IgA nephropathy. Lai KN, Tang SC, Schena FP, Novak J, Tomino Y, Fogo AB,Glassock RJ.
  Nat Rev Dis Primers. 2016 Feb 11;2:16001. doi: 10.1038/nrdp.2016.1.

• 13. AJKD Atlas of Renal Pathology: Toxic Acute Tubular Injury. Fogo AB,Lusco MA,Najafian B, Alpers CE.
  Am J Kidney Dis. 2016 Jun;67(6):e31-2. doi: 10.1053/j.ajkd.2016.04.003.

• 14. AJKD Atlas of Renal Pathology: Tubular Atrophy. Lusco MA,Fogo AB,Najafian B, Alpers CE.
  Am J Kidney Dis. 2016 Jun;67(6):e33-4. doi: 10.1053/j.ajkd.2016.04.007.

• 15. AJKD Atlas of Renal Pathology: Acute Interstitial Nephritis. Fogo AB,Lusco MA,Najafian B, Alpers CE.
  Am J Kidney Dis. 2016 Jun;67(6):e35-6. doi: 10.1053/j.ajkd.2016.04.002.

• 16. Prevention of apoptosis averts glomerular tubular disconnection and podocyte loss in proteinuric kidney disease. Burlaka I, Nilsson LM, Scott L, Holtbäck U, Eklöf AC,Fogo ABBrismar H, Aperia A.
  Kidney Int. 2016 May 20. pii: S0085-2538(16)30114-4. doi: 10.1016/j.kint.2016.03.026. [Epub ahead of print]

• 17. Quantification and Comparison of Anti-Fibrotic Therapies by Polarized SRM and SHG-Based Morphometry in Rat UUO Model. Qian HS, Weldon SM, Matera D, Lee C, Yang H, Fryer RM,Fogo AB,Reinhart GA.
  PLoS One. 2016 Jun 3;11(6):e0156734. doi: 10.1371/journal.pone.0156734. eCollection 2016.

• 18. Factor XI as a Therapeutic Target. Gailani D, Gruber A.
  Arterioscler Thromb Vasc Biol. 2016 May 12. pii: ATVBAHA.116.306925. [Epub ahead of print]

• 19. Why Factor XI Deficiency is a Clinical Concern. Wheeler AP, Gailani D.
  Expert Rev Hematol. 2016 May 24. [Epub ahead of print]

• 20. The UbiI (VisC) aerobic ubiquinone synthase is required for expression of type 1 pili, biofilm formation, and pathogenesis in uropathogenic Escherichia coli Floyd KA, Mitchell CA, Eberly AR, Colling SJ, Zhang EW, DePas W, Chapman MR, Conover M, Rogers BR, Hultgren SJ, Hadjifrangiskou M.
  J Bacteriol. 2016 May 9. pii: JB.00030-16. [Epub ahead of print]

• 21. The arsenal of pathogens and antivirulence therapeutic strategies for disarming them Brannon JR,Hadjifrangiskou M.
  DDDT, 27 May 2016 Volume 2016:10 Pages 1795—1806

• 22. Pyridoxamine reduces post-injury fibrosis and improves functional recovery after acute kidney injury. Skrypnyk NI, Voziyan P, Yang H, de Caestecker CR, Theberge MC, Drouin M, Hudson B,Harris RC,de Caestecker MP.
  Am J Physiol Renal Physiol. 2016 May 18:ajprenal.00056.2016. doi: 10.1152/ajprenal.00056.2016. [Epub ahead of print]

• 23. Extracellular chloride signals collagen IV network assembly during basement membrane formation. Cummings CF, Pedchenko V, Brown KL, Colon S, Rafi M, Jones-Paris C, Pokydeshava E, Liu M, Pastor-Pareja JC, Stothers C, Ero-Tolliver IA, McCall AS, Vanacore R, Bhave G, Santoro S, Blackwell TS, Zent R, Pozzi A,Hudson BG.
  J Cell Biol. 2016 May 23;213(4):479-94. doi: 10.1083/jcb.201510065.

• 24. Systems immune monitoring in cancer therapy. Greenplate AR, Johnson DB, Ferrell PB Jr,Irish JM.
  Eur J Cancer. 2016 Jul;61:77-84. doi: 10.1016/j.ejca.2016.03.085. Epub 2016 May 4. Review.

• 25. Clostridium difficile infection. Smits WK, Lyras D, Lacy DB,Wilcox MH, Kuijper EJ.
  Nat Rev Dis Primers. 2016 Apr 7;2:16020. doi: 10.1038/nrdp.2016.20.

• 26. Impact of pre-adapted HIV transmission. Carlson JM, Du VY, Pfeifer N, Bansal A, Tan VY, Power K, Brumme CJ, Kreimer A, DeZiel CE, Fusi N, Schaefer M, Brockman MA, Gilmour J, Price MA, Kilembe W, Haubrich R, John M, Mallal S,Shapiro R, Frater J, Harrigan PR, Ndung'u T, Allen S, Heckerman D, Sidney J, Allen TM, Goulder PJ, Brumme ZL, Hunter E, Goepfert PA.
  Nat Med. 2016 May 16. doi: 10.1038/nm.4100. [Epub ahead of print]

• 27. Primer ID ultra-deep sequencing reveals dynamics of drug resistance-associated variants in breakthrough hepatitis C viruses: relevance to treatment outcome and resistance screening. Barnard R, Chopra A, James I, Blinco J, Watson MW, Jabara CB, Hazuda D, Lemon SM, Mallal S, Gaudieri S.
  Antivir Ther. 2016 May 24. doi: 10.3851/IMP3056. [Epub ahead of print]

• 28.Cytomegalovirus Enterocolitis in Immunocompetent Young Children: A Report of Two Cases and Review of the Literature.Sue PK, Salazar-Austin NM, McDonald OG, Rishi A, Cornish TC, Arav-Boger R.
  Pediatr Infect Dis J. 2016 May;35(5):573-6. doi: 10.1097/INF.0000000000001080.

• 29. Genetic Evolution of a Helicobacter pylori Acid-Sensing Histidine Kinase and Gastric Disease. Krishna U, Romero-Gallo J, Suarez G, Azah A, Krezel AM, Varga MG, Forsyth MH, Peek RM Jr.
  J Infect Dis. 2016 May 10. pii: jiw189. [Epub ahead of print]

• 30. Not All Mice Are the Same: Standardization of Animal Research Data Presentation. Omary MB, Cohen DE, El-Omar E, Jalan R, Low M, Nathanson M, Peek R,Turner J.
  Gut. 2016 Jun;65(6):894-5. doi: 10.1136/gutjnl-2016-312041. No abstract available.

• 31. The Dawning of a New Editorial Board for Gastroenterology. Corley DA,Peek RM Jr.
  Gastroenterology. 2016 May 20. pii: S0016-5085(16)34451-1. doi: 10.1053/j.gastro.2016.05.008. [Epub ahead of print]

• 32. The Mongolian Gerbil: A Robust Model of Helicobacter pylori-Induced Gastric Inflammation and Cancer. Noto JM, Romero-Gallo J, Piazuelo MB, Peek RM.
  Methods Mol Biol. 2016;1422:263-80. doi: 10.1007/978-1-4939-3603-8_24.

• 33. Answers to Epilogue questions. Maalouf FI, Coggins SA, Phillips JA 3rd,Stefanescu BM, Weitkamp JH.
  Arch Dis Child Educ Pract Ed. 2016 Jun;101(3):168. doi: 10.1136/archdischild-2015-308719a. No abstract available.

• 34. Triple-negative breast cancer: challenges and opportunities of a heterogeneous disease. Bianchini G, Balko JM, Mayer IA, Sanders ME,Gianni L.
  Nat Rev Clin Oncol. 2016 May 17. doi: 10.1038/nrclinonc.2016.66. [Epub ahead of print] Review.

• 35. Prognostic impact of history of follicular lymphoma, induction regimen and stem cell transplant in patients with MYC/BCL2 double hit lymphoma. PLi S, Saksena A, Desai P, Xu J, Zuo Z, Lin P, Tang G, Yin CC,Seegmiller A,Jorgensen JL, Miranda RN, Reddy NM, Bueso-Ramos C, Medeiros LJ.
  Oncotarget. 2016 May 19. doi: 10.18632/oncotarget.9473. [Epub ahead of print]

• 36. The three Type 2A protein phosphatases, PP2Ac, PP4c and PP6c, are differentially regulated by Alpha4. LeNoue-Newton ML, Wadzinski BE, Spiller BW.
  Biochem Biophys Res Commun. 2016 Jun 17;475(1):64-9. doi: 10.1016/j.bbrc.2016.05.036. Epub 2016 May 8.

• 37. Diverse, Biologically Relevant, and Targetable Gene Rearrangements in Triple-Negative Breast Cancer and Other Malignancies. Shaver TM, Lehmann BD, Beeler JS, Li CI, Li Z, Jin H, Stricker TP, Shyr Y, Pietenpol JA.
  Cancer Res. 2016 May 26. pii: canres.0058.2016. [Epub ahead of print]

• 38. Discovery of Novel Splice Variants and Regulatory Mechanisms for Microsomal Triglyceride Transfer Protein in Human Tissues.Suzuki T, Swift LL.
  Sci Rep. 2016 Jun 3;6:27308. doi: 10.1038/srep27308.

• 39. Effect of Aspirin on Development of ARDS in At-Risk Patients Presenting to the Emergency Department: The LIPS-A Randomized Clinical Trial. Kor DJ, Carter RE, Park PK, Festic E, Banner-Goodspeed VM, Hinds R, Talmor D, Gajic O, Ware LB, Gong MN; US Critical Illness and Injury Trials Group: Lung Injury Prevention with Aspirin Study Group (USCIITG: LIPS-A).
  JAMA. 2016 May 15. doi: 10.1001/jama.2016.6330. [Epub ahead of print]

• 40. Association of common genetic variation in the protein C pathway genes with clinical outcomes in acute respiratory distress syndrome. Sapru A, Liu KD, Wiemels J, Hansen H, Pawlikowska L, Poon A, Jorgenson E, Witte JS, Calfee CS, Ware LB, Matthay MA; NHLBI ARDS Network.
  Crit Care. 2016 May 23;20(1):151. doi: 10.1186/s13054-016-1330-5.

• 41. Serum Fatty Acids Are Correlated with Inflammatory Cytokines in Ulcerative Colitis. Wiese DM, Horst SN, Brown CT, Allaman MM, Hodges ME, Slaughter JC, Druce JP, Beaulieu DB, Schwartz DA, Wilson KT, Coburn LA.
  PLoS One. 2016 May 26;11(5):e0156387. doi: 10.1371/journal.pone.0156387. eCollection 2016.